Code & Datasets

BTS Atlas

Brain Transcriptome Single-cell (BTS) Atlas

Anndata, Seurat object, and Celltypist model for the atlas. Plots for 3,380 neurological disorder risk genes expression profiles are available.

Zenodo UCSC Browser Paper
CWAS-Plus

CWAS-Plus

A new Python package for category-wide association study with better user-interface. Now available via pip install.

GitHub Docs

CWAS: Category-Wide Association Study

Cython wrapper script for category-wide association study (An et al. 2018, Science). Available as an Amazon Machine Image on AWS.

GitHub Paper
De novo Risk Score

De novo Risk Score & Annotation Clustering

R scripts for risk score analysis and annotation clustering (An et al. 2018, Science).

GitHub Paper
CatBurden

CatBurden: Category-based Burden Test

R/Python wrapper for category-based burden test and first CWAS edition (Werling et al. 2018, Nature Genetics). Distributed as AMI on AWS.

GitHub Paper

Hail Tutorial (Korean)

우리말로 된 Hail 튜토리얼입니다.

GitHub